scyTo_0009547 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0009547

HTH CENPB-type domain-containing protein. (522 aa)

Predicted Functional Partners:

scyTo_0007364

0.983

scyTo_0006644

0.963

scyTo_0024817

0.949

scyTo_0026253

0.949

scyTo_0006869

0.937

scyTo_0009292

0.937

scyTo_0004531

0.937

scyTo_0002374

0.937

scyTo_0016126

0.881

scyTo_0005076

0.819

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0002374	scyTo_0004531	A0A401PJ39	A0A401NT54	Uncharacterized protein.	Uncharacterized protein.	0.899
scyTo_0002374	scyTo_0005076	A0A401PJ39	A0A401P1X6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.805
scyTo_0002374	scyTo_0006644	A0A401PJ39	A0A401PJ55	Uncharacterized protein.	Autophagy-related protein 3.	0.880
scyTo_0002374	scyTo_0007364	A0A401PJ39	A0A401NQX0	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.953
scyTo_0002374	scyTo_0009292	A0A401PJ39	A0A401NJW4	Uncharacterized protein.	ATG11 domain-containing protein.	0.583
scyTo_0002374	scyTo_0009547	A0A401PJ39	A0A401NNX2	Uncharacterized protein.	HTH CENPB-type domain-containing protein.	0.937
scyTo_0002374	scyTo_0016126	A0A401PJ39	A0A401Q492	Uncharacterized protein.	Uncharacterized protein.	0.874
scyTo_0002374	scyTo_0024817	A0A401PJ39	A0A401QFB4	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.919
scyTo_0002374	scyTo_0026253	A0A401PJ39	A0A401QJM2	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.919
scyTo_0004531	scyTo_0002374	A0A401NT54	A0A401PJ39	Uncharacterized protein.	Uncharacterized protein.	0.899
scyTo_0004531	scyTo_0005076	A0A401NT54	A0A401P1X6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.805
scyTo_0004531	scyTo_0006644	A0A401NT54	A0A401PJ55	Uncharacterized protein.	Autophagy-related protein 3.	0.880
scyTo_0004531	scyTo_0007364	A0A401NT54	A0A401NQX0	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.953
scyTo_0004531	scyTo_0009292	A0A401NT54	A0A401NJW4	Uncharacterized protein.	ATG11 domain-containing protein.	0.583
scyTo_0004531	scyTo_0009547	A0A401NT54	A0A401NNX2	Uncharacterized protein.	HTH CENPB-type domain-containing protein.	0.937
scyTo_0004531	scyTo_0016126	A0A401NT54	A0A401Q492	Uncharacterized protein.	Uncharacterized protein.	0.874
scyTo_0004531	scyTo_0024817	A0A401NT54	A0A401QFB4	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.919
scyTo_0004531	scyTo_0026253	A0A401NT54	A0A401QJM2	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.919
scyTo_0005076	scyTo_0002374	A0A401P1X6	A0A401PJ39	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.805
scyTo_0005076	scyTo_0004531	A0A401P1X6	A0A401NT54	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.805