scyTo_0007270 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0007270

Uncharacterized protein. (834 aa)

Predicted Functional Partners:

scyTo_0020990

0.954

scyTo_0016912

0.933

scyTo_0021764

0.918

scyTo_0020105

0.906

scyTo_0025461

0.906

scyTo_0008769

0.888

scyTo_0017397

0.888

scyTo_0018891

0.888

scyTo_0009194

0.881

scyTo_0014717

0.881

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0007270	scyTo_0008769	A0A401NPE2	A0A401PDC4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.888
scyTo_0007270	scyTo_0009194	A0A401NPE2	A0A401NI68	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.881
scyTo_0007270	scyTo_0014717	A0A401NPE2	A0A401NT73	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.881
scyTo_0007270	scyTo_0016912	A0A401NPE2	A0A401Q173	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.933
scyTo_0007270	scyTo_0017397	A0A401NPE2	A0A401PRY9	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.888
scyTo_0007270	scyTo_0018891	A0A401NPE2	A0A401Q468	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.888
scyTo_0007270	scyTo_0020105	A0A401NPE2	A0A401PZG1	Uncharacterized protein.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.906
scyTo_0007270	scyTo_0020990	A0A401NPE2	A0A401PSZ7	Uncharacterized protein.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.954
scyTo_0007270	scyTo_0021764	A0A401NPE2	A0A401Q6H2	Uncharacterized protein.	Uncharacterized protein.	0.918
scyTo_0007270	scyTo_0025461	A0A401NPE2	A0A401QHC8	Uncharacterized protein.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.906
scyTo_0008769	scyTo_0007270	A0A401PDC4	A0A401NPE2	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.888
scyTo_0008769	scyTo_0009194	A0A401PDC4	A0A401NI68	Non-specific serine/threonine protein kinase.	Ubiquitin-like domain-containing protein.	0.564
scyTo_0008769	scyTo_0014717	A0A401PDC4	A0A401NT73	Non-specific serine/threonine protein kinase.	Ubiquitin-like domain-containing protein.	0.564
scyTo_0008769	scyTo_0020105	A0A401PDC4	A0A401PZG1	Non-specific serine/threonine protein kinase.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.586
scyTo_0008769	scyTo_0020990	A0A401PDC4	A0A401PSZ7	Non-specific serine/threonine protein kinase.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.606
scyTo_0008769	scyTo_0021764	A0A401PDC4	A0A401Q6H2	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.603
scyTo_0008769	scyTo_0025461	A0A401PDC4	A0A401QHC8	Non-specific serine/threonine protein kinase.	Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.586
scyTo_0009194	scyTo_0007270	A0A401NI68	A0A401NPE2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.881
scyTo_0009194	scyTo_0008769	A0A401NI68	A0A401PDC4	Ubiquitin-like domain-containing protein.	Non-specific serine/threonine protein kinase.	0.564
scyTo_0009194	scyTo_0016912	A0A401NI68	A0A401Q173	Ubiquitin-like domain-containing protein.	Mothers against decapentaplegic homolog.	0.693