scyTo_0000145 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0000145

DUF2040 domain-containing protein. (534 aa)

Predicted Functional Partners:

scyTo_0016137

0.965

scyTo_0002287

0.959

scyTo_0000598

0.956

scyTo_0002880

0.955

scyTo_0000470

0.953

scyTo_0021371

0.952

scyTo_0004378

0.950

scyTo_0000348

0.950

scyTo_0002513

0.950

scyTo_0006203

0.949

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0000145	scyTo_0000348	A0A401NR30	A0A401NVQ9	DUF2040 domain-containing protein.	Uncharacterized protein.	0.950
scyTo_0000145	scyTo_0000470	A0A401NR30	A0A401NY54	DUF2040 domain-containing protein.	Uncharacterized protein.	0.953
scyTo_0000145	scyTo_0000598	A0A401NR30	A0A401NZX9	DUF2040 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.956
scyTo_0000145	scyTo_0002287	A0A401NR30	A0A401PIS5	DUF2040 domain-containing protein.	DUF1716 domain-containing protein.	0.959
scyTo_0000145	scyTo_0002513	A0A401NR30	A0A401PJV3	DUF2040 domain-containing protein.	Uncharacterized protein.	0.950
scyTo_0000145	scyTo_0002880	A0A401NR30	A0A401PL24	DUF2040 domain-containing protein.	Cir_N domain-containing protein.	0.955
scyTo_0000145	scyTo_0004378	A0A401NR30	A0A401NQY4	DUF2040 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.950
scyTo_0000145	scyTo_0006203	A0A401NR30	A0A401PGH6	DUF2040 domain-containing protein.	RRM domain-containing protein.	0.949
scyTo_0000145	scyTo_0016137	A0A401NR30	A0A401Q4C6	DUF2040 domain-containing protein.	PWI domain-containing protein.	0.965
scyTo_0000145	scyTo_0021371	A0A401NR30	A0A401Q7F8	DUF2040 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.952
scyTo_0000348	scyTo_0000145	A0A401NVQ9	A0A401NR30	Uncharacterized protein.	DUF2040 domain-containing protein.	0.950
scyTo_0000348	scyTo_0000470	A0A401NVQ9	A0A401NY54	Uncharacterized protein.	Uncharacterized protein.	0.984
scyTo_0000348	scyTo_0000598	A0A401NVQ9	A0A401NZX9	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.985
scyTo_0000348	scyTo_0002287	A0A401NVQ9	A0A401PIS5	Uncharacterized protein.	DUF1716 domain-containing protein.	0.702
scyTo_0000348	scyTo_0002513	A0A401NVQ9	A0A401PJV3	Uncharacterized protein.	Uncharacterized protein.	0.976
scyTo_0000348	scyTo_0002880	A0A401NVQ9	A0A401PL24	Uncharacterized protein.	Cir_N domain-containing protein.	0.980
scyTo_0000348	scyTo_0004378	A0A401NVQ9	A0A401NQY4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
scyTo_0000348	scyTo_0006203	A0A401NVQ9	A0A401PGH6	Uncharacterized protein.	RRM domain-containing protein.	0.976
scyTo_0000348	scyTo_0016137	A0A401NVQ9	A0A401Q4C6	Uncharacterized protein.	PWI domain-containing protein.	0.923
scyTo_0000348	scyTo_0021371	A0A401NVQ9	A0A401Q7F8	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.961