STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0000225Uncharacterized protein. (1410 aa)    
Predicted Functional Partners:
scyTo_0003058
Dynein_AAA_lid domain-containing protein.
 
     0.913
scyTo_0018301
DHC_N2 domain-containing protein.
 
     0.899
scyTo_0002767
Uncharacterized protein.
 
     0.851
scyTo_0014683
AAA_6 domain-containing protein.
 
     0.848
PAFAH1B1
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.
    
 0.836
scyTo_0000226
Uncharacterized protein.
 
     0.794
scyTo_0024198
AAA_6 domain-containing protein.
 
      0.787
scyTo_0025773
AAA_6 domain-containing protein.
 
     0.787
scyTo_0002663
Dynein light chain roadblock.
    
 0.766
scyTo_0003421
Uncharacterized protein.
    
 0.752
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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