STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0011718Iwr1 domain-containing protein. (289 aa)    
Predicted Functional Partners:
scyTo_0018618
RPOLD domain-containing protein.
    
 
 0.949
scyTo_0022153
RNA_pol_Rpb5_C domain-containing protein.
   
 
 0.928
scyTo_0002300
RNA_pol_L_2 domain-containing protein.
    
 
 0.923
scyTo_0020544
RPOL4c domain-containing protein.
    
 
 0.917
scyTo_0007023
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.909
scyTo_0023590
SHS2_Rpb7-N domain-containing protein.
    
 
 0.878
scyTo_0014586
Uncharacterized protein.
    
 
 0.876
scyTo_0019429
RPOLD domain-containing protein.
    
 
 0.861
scyTo_0018614
TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 
 0.851
scyTo_0021741
Uncharacterized protein.
    
 
 0.851
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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