scyTo_0009808 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0009808

Uncharacterized protein. (596 aa)

Predicted Functional Partners:

scyTo_0012382

0.876

scyTo_0006789

0.856

scyTo_0009059

0.822

scyTo_0002570

0.822

scyTo_0005076

0.803

scyTo_0003605

0.794

scyTo_0011847

0.777

scyTo_0001905

0.770

scyTo_0003208

0.770

scyTo_0025694

0.770

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0001905	scyTo_0005076	A0A401PGL6	A0A401P1X6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.696
scyTo_0001905	scyTo_0009808	A0A401PGL6	A0A401NU90	Uncharacterized protein.	Uncharacterized protein.	0.770
scyTo_0001905	scyTo_0012382	A0A401PGL6	A0A401P7X8	Uncharacterized protein.	SAC domain-containing protein.	0.769
scyTo_0002570	scyTo_0009059	A0A401PK43	A0A401PGF8	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	PIPK domain-containing protein.	0.878
scyTo_0002570	scyTo_0009808	A0A401PK43	A0A401NU90	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	Uncharacterized protein.	0.822
scyTo_0003208	scyTo_0005076	A0A401PM13	A0A401P1X6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.696
scyTo_0003208	scyTo_0009808	A0A401PM13	A0A401NU90	Uncharacterized protein.	Uncharacterized protein.	0.770
scyTo_0003208	scyTo_0011847	A0A401PM13	A0A401NWJ2	Uncharacterized protein.	UDENN domain-containing protein.	0.940
scyTo_0003208	scyTo_0012382	A0A401PM13	A0A401P7X8	Uncharacterized protein.	SAC domain-containing protein.	0.769
scyTo_0003208	scyTo_0025694	A0A401PM13	A0A401QI17	Uncharacterized protein.	UDENN domain-containing protein.	0.894
scyTo_0003605	scyTo_0005076	A0A401PMY2	A0A401P1X6	Myotubularin phosphatase domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.866
scyTo_0003605	scyTo_0009808	A0A401PMY2	A0A401NU90	Myotubularin phosphatase domain-containing protein.	Uncharacterized protein.	0.794
scyTo_0003605	scyTo_0012382	A0A401PMY2	A0A401P7X8	Myotubularin phosphatase domain-containing protein.	SAC domain-containing protein.	0.855
scyTo_0005076	scyTo_0001905	A0A401P1X6	A0A401PGL6	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.696
scyTo_0005076	scyTo_0003208	A0A401P1X6	A0A401PM13	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.696
scyTo_0005076	scyTo_0003605	A0A401P1X6	A0A401PMY2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Myotubularin phosphatase domain-containing protein.	0.866
scyTo_0005076	scyTo_0006789	A0A401P1X6	A0A401PK15	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.930
scyTo_0005076	scyTo_0009059	A0A401P1X6	A0A401PGF8	Phosphatidylinositol 3-kinase catalytic subunit type 3.	PIPK domain-containing protein.	0.412
scyTo_0005076	scyTo_0009808	A0A401P1X6	A0A401NU90	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein.	0.803
scyTo_0005076	scyTo_0011847	A0A401P1X6	A0A401NWJ2	Phosphatidylinositol 3-kinase catalytic subunit type 3.	UDENN domain-containing protein.	0.696