STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0011752Uncharacterized protein. (906 aa)    
Predicted Functional Partners:
scyTo_0024059
Uncharacterized protein.
    
 
 0.943
scyTo_0007845
COMM domain-containing protein.
    
 
 0.938
scyTo_0000811
COMM domain-containing protein.
    
 
 0.917
scyTo_0012571
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.913
scyTo_0017226
COMM domain-containing protein.
    
 
 0.907
scyTo_0001076
COMM domain-containing protein.
    
 
 0.905
scyTo_0000548
COMM domain-containing protein.
    
 
 0.874
scyTo_0017902
COMM domain-containing protein.
    
 
 0.874
scyTo_0003525
UDENN domain-containing protein.
    
 
 0.843
scyTo_0011438
KOG2701 domain-containing protein.
    
 
 0.827
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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