Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
scyTo_0000033 | scyTo_0001542 | A0A401NNK4 | A0A401PE24 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | HMG box domain-containing protein. | 0.790 |
scyTo_0000033 | scyTo_0001770 | A0A401NNK4 | A0A401PFU0 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | HMG box domain-containing protein. | 0.790 |
scyTo_0000033 | scyTo_0011686 | A0A401NNK4 | A0A401NSV8 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | Uncharacterized protein. | 0.505 |
scyTo_0001542 | scyTo_0000033 | A0A401PE24 | A0A401NNK4 | HMG box domain-containing protein. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | 0.790 |
scyTo_0001542 | scyTo_0001770 | A0A401PE24 | A0A401PFU0 | HMG box domain-containing protein. | HMG box domain-containing protein. | 0.833 |
scyTo_0001542 | scyTo_0002871 | A0A401PE24 | A0A401PKY8 | HMG box domain-containing protein. | PHD-type domain-containing protein. | 0.890 |
scyTo_0001542 | scyTo_0003642 | A0A401PE24 | A0A401PN97 | HMG box domain-containing protein. | Uncharacterized protein. | 0.816 |
scyTo_0001542 | scyTo_0006922 | A0A401PE24 | A0A401NIP8 | HMG box domain-containing protein. | Uncharacterized protein; Belongs to the actin family. | 0.785 |
scyTo_0001542 | scyTo_0007114 | A0A401PE24 | A0A401NLQ3 | HMG box domain-containing protein. | DUF3736 domain-containing protein. | 0.815 |
scyTo_0001542 | scyTo_0011686 | A0A401PE24 | A0A401NSV8 | HMG box domain-containing protein. | Uncharacterized protein. | 0.834 |
scyTo_0001542 | scyTo_0012116 | A0A401PE24 | A0A401P263 | HMG box domain-containing protein. | Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. | 0.908 |
scyTo_0001542 | scyTo_0020299 | A0A401PE24 | A0A401PPB7 | HMG box domain-containing protein. | Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. | 0.848 |
scyTo_0001542 | scyTo_0021689 | A0A401PE24 | A0A401QBG2 | HMG box domain-containing protein. | Uncharacterized protein. | 0.827 |
scyTo_0001770 | scyTo_0000033 | A0A401PFU0 | A0A401NNK4 | HMG box domain-containing protein. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | 0.790 |
scyTo_0001770 | scyTo_0001542 | A0A401PFU0 | A0A401PE24 | HMG box domain-containing protein. | HMG box domain-containing protein. | 0.833 |
scyTo_0001770 | scyTo_0002871 | A0A401PFU0 | A0A401PKY8 | HMG box domain-containing protein. | PHD-type domain-containing protein. | 0.985 |
scyTo_0001770 | scyTo_0003642 | A0A401PFU0 | A0A401PN97 | HMG box domain-containing protein. | Uncharacterized protein. | 0.401 |
scyTo_0001770 | scyTo_0006922 | A0A401PFU0 | A0A401NIP8 | HMG box domain-containing protein. | Uncharacterized protein; Belongs to the actin family. | 0.785 |
scyTo_0001770 | scyTo_0007114 | A0A401PFU0 | A0A401NLQ3 | HMG box domain-containing protein. | DUF3736 domain-containing protein. | 0.922 |
scyTo_0001770 | scyTo_0011686 | A0A401PFU0 | A0A401NSV8 | HMG box domain-containing protein. | Uncharacterized protein. | 0.834 |
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