scyTo_0003046 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0003046

Uncharacterized protein. (172 aa)

Predicted Functional Partners:

scyTo_0010793

0.782

scyTo_0012630

0.564

scyTo_0014984

0.564

scyTo_0014669

0.536

scyTo_0005669

0.536

scyTo_0007201

0.459

scyTo_0008630

0.459

scyTo_0008835

0.459

scyTo_0007626

0.442

scyTo_0006367

0.421

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003046	scyTo_0005669	A0A401PLI1	A0A401PBA5	Uncharacterized protein.	Uncharacterized protein.	0.536
scyTo_0003046	scyTo_0006367	A0A401PLI1	A0A401PHK1	Uncharacterized protein.	Uncharacterized protein.	0.421
scyTo_0003046	scyTo_0007201	A0A401PLI1	A0A401NN12	Uncharacterized protein.	Uncharacterized protein.	0.459
scyTo_0003046	scyTo_0007626	A0A401PLI1	A0A401NVY7	Uncharacterized protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.442
scyTo_0003046	scyTo_0008630	A0A401PLI1	A0A401PC05	Uncharacterized protein.	Uncharacterized protein.	0.459
scyTo_0003046	scyTo_0008835	A0A401PLI1	A0A401PE47	Uncharacterized protein.	Protein kinase domain-containing protein.	0.459
scyTo_0003046	scyTo_0010793	A0A401PLI1	A0A401PBL2	Uncharacterized protein.	Uncharacterized protein; Protein phosphatase inhibitor that specifically inhibits protein phosphatase 2A (PP2A) during mitosis. Belongs to the endosulfine family.	0.782
scyTo_0003046	scyTo_0012630	A0A401PLI1	A0A401NGR8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.564
scyTo_0003046	scyTo_0014669	A0A401PLI1	A0A401NS57	Uncharacterized protein.	Uncharacterized protein.	0.536
scyTo_0003046	scyTo_0014984	A0A401PLI1	A0A401NZQ7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.564
scyTo_0005669	scyTo_0003046	A0A401PBA5	A0A401PLI1	Uncharacterized protein.	Uncharacterized protein.	0.536
scyTo_0005669	scyTo_0007201	A0A401PBA5	A0A401NN12	Uncharacterized protein.	Uncharacterized protein.	0.726
scyTo_0005669	scyTo_0008835	A0A401PBA5	A0A401PE47	Uncharacterized protein.	Protein kinase domain-containing protein.	0.726
scyTo_0005669	scyTo_0012630	A0A401PBA5	A0A401NGR8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.741
scyTo_0005669	scyTo_0014984	A0A401PBA5	A0A401NZQ7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.741
scyTo_0006367	scyTo_0003046	A0A401PHK1	A0A401PLI1	Uncharacterized protein.	Uncharacterized protein.	0.421
scyTo_0006367	scyTo_0007201	A0A401PHK1	A0A401NN12	Uncharacterized protein.	Uncharacterized protein.	0.992
scyTo_0006367	scyTo_0008835	A0A401PHK1	A0A401PE47	Uncharacterized protein.	Protein kinase domain-containing protein.	0.996
scyTo_0006367	scyTo_0012630	A0A401PHK1	A0A401NGR8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.741
scyTo_0006367	scyTo_0014984	A0A401PHK1	A0A401NZQ7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.741