scyTo_0003423 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0003423

TPR_REGION domain-containing protein. (508 aa)

Predicted Functional Partners:

scyTo_0006445

0.817

scyTo_0022204

0.748

scyTo_0020361

0.722

scyTo_0018640

0.722

scyTo_0015878

0.722

scyTo_0015876

0.722

scyTo_0022263

0.722

scyTo_0025104

0.722

scyTo_0004727

0.660

scyTo_0022415

0.660

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003423	scyTo_0004727	A0A401PMG4	A0A401NWD5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.660
scyTo_0003423	scyTo_0006445	A0A401PMG4	A0A401PHX2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.817
scyTo_0003423	scyTo_0015876	A0A401PMG4	A0A401Q0F8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
scyTo_0003423	scyTo_0015878	A0A401PMG4	A0A401Q090	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
scyTo_0003423	scyTo_0018640	A0A401PMG4	A0A401PZW7	TPR_REGION domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.722
scyTo_0003423	scyTo_0020361	A0A401PMG4	A0A401PQP9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
scyTo_0003423	scyTo_0022204	A0A401PMG4	A0A401Q899	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.748
scyTo_0003423	scyTo_0022263	A0A401PMG4	A0A401Q9E4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
scyTo_0003423	scyTo_0022415	A0A401PMG4	A0A401Q652	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.660
scyTo_0003423	scyTo_0025104	A0A401PMG4	A0A401QGS4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
scyTo_0004727	scyTo_0003423	A0A401NWD5	A0A401PMG4	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.660
scyTo_0004727	scyTo_0015876	A0A401NWD5	A0A401Q0F8	Uncharacterized protein.	Uncharacterized protein.	0.558
scyTo_0004727	scyTo_0015878	A0A401NWD5	A0A401Q090	Uncharacterized protein.	Uncharacterized protein.	0.558
scyTo_0004727	scyTo_0018640	A0A401NWD5	A0A401PZW7	Uncharacterized protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.558
scyTo_0004727	scyTo_0020361	A0A401NWD5	A0A401PQP9	Uncharacterized protein.	Uncharacterized protein.	0.558
scyTo_0004727	scyTo_0022263	A0A401NWD5	A0A401Q9E4	Uncharacterized protein.	Uncharacterized protein.	0.558
scyTo_0004727	scyTo_0025104	A0A401NWD5	A0A401QGS4	Uncharacterized protein.	Uncharacterized protein.	0.558
scyTo_0006445	scyTo_0003423	A0A401PHX2	A0A401PMG4	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.817
scyTo_0006445	scyTo_0015876	A0A401PHX2	A0A401Q0F8	Uncharacterized protein.	Uncharacterized protein.	0.815
scyTo_0006445	scyTo_0015878	A0A401PHX2	A0A401Q090	Uncharacterized protein.	Uncharacterized protein.	0.815