scyTo_0017490 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0017490

UBIQUITIN_CONJUGAT_2 domain-containing protein. (146 aa)

Predicted Functional Partners:

scyTo_0002904

0.965

scyTo_0003819

0.928

scyTo_0015634

0.928

scyTo_0012853

0.906

scyTo_0002847

0.886

scyTo_0003284

0.886

scyTo_0003048

0.884

scyTo_0017775

0.884

scyTo_0005367

0.875

scyTo_0008372

0.871

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0002847	scyTo_0002904	A0A401PKY1	A0A401PL12	E2_bind domain-containing protein.	Uncharacterized protein.	0.990
scyTo_0002847	scyTo_0003048	A0A401PKY1	A0A401PLH8	E2_bind domain-containing protein.	Ubiquitin-like domain-containing protein.	0.881
scyTo_0002847	scyTo_0003284	A0A401PKY1	A0A401PM48	E2_bind domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	0.905
scyTo_0002847	scyTo_0003819	A0A401PKY1	A0A401PNN7	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.792
scyTo_0002847	scyTo_0008372	A0A401PKY1	A0A401P898	E2_bind domain-containing protein.	ThiF domain-containing protein.	0.882
scyTo_0002847	scyTo_0012853	A0A401PKY1	A0A401NJQ6	E2_bind domain-containing protein.	Uncharacterized protein.	0.582
scyTo_0002847	scyTo_0015634	A0A401PKY1	A0A401PVV0	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.792
scyTo_0002847	scyTo_0017490	A0A401PKY1	A0A401PU30	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.886
scyTo_0002847	scyTo_0017775	A0A401PKY1	A0A401Q032	E2_bind domain-containing protein.	Ubiquitin-like domain-containing protein.	0.881
scyTo_0002904	scyTo_0002847	A0A401PL12	A0A401PKY1	Uncharacterized protein.	E2_bind domain-containing protein.	0.990
scyTo_0002904	scyTo_0003048	A0A401PL12	A0A401PLH8	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.985
scyTo_0002904	scyTo_0003284	A0A401PL12	A0A401PM48	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	0.984
scyTo_0002904	scyTo_0003819	A0A401PL12	A0A401PNN7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.639
scyTo_0002904	scyTo_0005367	A0A401PL12	A0A401P6Q7	Uncharacterized protein.	Uncharacterized protein.	0.533
scyTo_0002904	scyTo_0008372	A0A401PL12	A0A401P898	Uncharacterized protein.	ThiF domain-containing protein.	0.984
scyTo_0002904	scyTo_0012853	A0A401PL12	A0A401NJQ6	Uncharacterized protein.	Uncharacterized protein.	0.595
scyTo_0002904	scyTo_0015634	A0A401PL12	A0A401PVV0	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.639
scyTo_0002904	scyTo_0017490	A0A401PL12	A0A401PU30	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.965
scyTo_0002904	scyTo_0017775	A0A401PL12	A0A401Q032	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.985
scyTo_0003048	scyTo_0002847	A0A401PLH8	A0A401PKY1	Ubiquitin-like domain-containing protein.	E2_bind domain-containing protein.	0.881