scyTo_0017658 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0017658

Aa_trans domain-containing protein. (477 aa)

Predicted Functional Partners:

scyTo_0011161

0.800

scyTo_0017706

0.799

scyTo_0006495

0.792

scyTo_0008444

0.750

scyTo_0024724

0.750

scyTo_0010704

0.711

scyTo_0007631

0.708

scyTo_0003114

0.708

scyTo_0014025

0.692

scyTo_0014961

0.692

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003114	scyTo_0006495	A0A401PLN0	A0A401PID2	Uncharacterized protein.	Uncharacterized protein.	0.996
scyTo_0003114	scyTo_0007631	A0A401PLN0	A0A401NVY4	Uncharacterized protein.	Uncharacterized protein.	0.872
scyTo_0003114	scyTo_0008444	A0A401PLN0	A0A401P9G7	Uncharacterized protein.	Uncharacterized protein.	0.946
scyTo_0003114	scyTo_0011161	A0A401PLN0	A0A401NI93	Uncharacterized protein.	Uncharacterized protein.	0.984
scyTo_0003114	scyTo_0017658	A0A401PLN0	A0A401PXD9	Uncharacterized protein.	Aa_trans domain-containing protein.	0.708
scyTo_0003114	scyTo_0017706	A0A401PLN0	A0A401PYB2	Uncharacterized protein.	Uncharacterized protein.	0.992
scyTo_0003114	scyTo_0024724	A0A401PLN0	A0A401QF33	Uncharacterized protein.	Uncharacterized protein.	0.976
scyTo_0006495	scyTo_0003114	A0A401PID2	A0A401PLN0	Uncharacterized protein.	Uncharacterized protein.	0.996
scyTo_0006495	scyTo_0007631	A0A401PID2	A0A401NVY4	Uncharacterized protein.	Uncharacterized protein.	0.996
scyTo_0006495	scyTo_0008444	A0A401PID2	A0A401P9G7	Uncharacterized protein.	Uncharacterized protein.	0.978
scyTo_0006495	scyTo_0011161	A0A401PID2	A0A401NI93	Uncharacterized protein.	Uncharacterized protein.	0.994
scyTo_0006495	scyTo_0017658	A0A401PID2	A0A401PXD9	Uncharacterized protein.	Aa_trans domain-containing protein.	0.792
scyTo_0006495	scyTo_0017706	A0A401PID2	A0A401PYB2	Uncharacterized protein.	Uncharacterized protein.	0.995
scyTo_0006495	scyTo_0024724	A0A401PID2	A0A401QF33	Uncharacterized protein.	Uncharacterized protein.	0.987
scyTo_0007631	scyTo_0003114	A0A401NVY4	A0A401PLN0	Uncharacterized protein.	Uncharacterized protein.	0.872
scyTo_0007631	scyTo_0006495	A0A401NVY4	A0A401PID2	Uncharacterized protein.	Uncharacterized protein.	0.996
scyTo_0007631	scyTo_0008444	A0A401NVY4	A0A401P9G7	Uncharacterized protein.	Uncharacterized protein.	0.946
scyTo_0007631	scyTo_0011161	A0A401NVY4	A0A401NI93	Uncharacterized protein.	Uncharacterized protein.	0.984
scyTo_0007631	scyTo_0017658	A0A401NVY4	A0A401PXD9	Uncharacterized protein.	Aa_trans domain-containing protein.	0.708
scyTo_0007631	scyTo_0017706	A0A401NVY4	A0A401PYB2	Uncharacterized protein.	Uncharacterized protein.	0.992