scyTo_0017751 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0017751

Uncharacterized protein. (187 aa)

Predicted Functional Partners:

scyTo_0004378

0.966

scyTo_0016720

0.956

scyTo_0002444

0.951

scyTo_0011504

0.949

scyTo_0015086

0.947

scyTo_0009726

0.930

scyTo_0023166

0.925

scyTo_0013004

0.924

scyTo_0006510

0.924

scyTo_0013481

0.922

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0002444	scyTo_0004378	A0A401PJF1	A0A401NQY4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
scyTo_0002444	scyTo_0006510	A0A401PJF1	A0A401PIB9	Uncharacterized protein.	Uncharacterized protein.	0.921
scyTo_0002444	scyTo_0009726	A0A401PJF1	A0A401NSL5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
scyTo_0002444	scyTo_0011504	A0A401PJF1	A0A401NPD5	Uncharacterized protein.	Uncharacterized protein.	0.978
scyTo_0002444	scyTo_0013004	A0A401PJF1	A0A401NM61	Uncharacterized protein.	Uncharacterized protein.	0.994
scyTo_0002444	scyTo_0013481	A0A401PJF1	A0A401NXP5	Uncharacterized protein.	Nkap_C domain-containing protein.	0.947
scyTo_0002444	scyTo_0015086	A0A401PJF1	A0A401P1Z7	Uncharacterized protein.	Uncharacterized protein.	0.960
scyTo_0002444	scyTo_0016720	A0A401PJF1	A0A401PWW8	Uncharacterized protein.	Slu7 domain-containing protein.	0.996
scyTo_0002444	scyTo_0017751	A0A401PJF1	A0A401PZH6	Uncharacterized protein.	Uncharacterized protein.	0.951
scyTo_0002444	scyTo_0023166	A0A401PJF1	A0A401Q8D9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.993
scyTo_0004378	scyTo_0002444	A0A401NQY4	A0A401PJF1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
scyTo_0004378	scyTo_0006510	A0A401NQY4	A0A401PIB9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.936
scyTo_0004378	scyTo_0011504	A0A401NQY4	A0A401NPD5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.958
scyTo_0004378	scyTo_0013004	A0A401NQY4	A0A401NM61	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
scyTo_0004378	scyTo_0013481	A0A401NQY4	A0A401NXP5	WD_REPEATS_REGION domain-containing protein.	Nkap_C domain-containing protein.	0.944
scyTo_0004378	scyTo_0015086	A0A401NQY4	A0A401P1Z7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
scyTo_0004378	scyTo_0016720	A0A401NQY4	A0A401PWW8	WD_REPEATS_REGION domain-containing protein.	Slu7 domain-containing protein.	0.999
scyTo_0004378	scyTo_0017751	A0A401NQY4	A0A401PZH6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
scyTo_0004378	scyTo_0023166	A0A401NQY4	A0A401Q8D9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
scyTo_0006510	scyTo_0002444	A0A401PIB9	A0A401PJF1	Uncharacterized protein.	Uncharacterized protein.	0.921