STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0015924IF rod domain-containing protein; Belongs to the intermediate filament family. (445 aa)    
Predicted Functional Partners:
scyTo_0010018
Uncharacterized protein.
   
 0.825
scyTo_0023995
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
0.718
scyTo_0025926
IF rod domain-containing protein.
    
 
0.701
scyTo_0021875
MHC_II_alpha domain-containing protein.
    
   0.667
scyTo_0004667
SUN domain-containing protein.
    
 0.651
scyTo_0016345
SUN domain-containing protein.
    
 0.651
scyTo_0014516
LEM domain-containing protein.
    
 0.636
scyTo_0002010
Uncharacterized protein.
    
 0.636
scyTo_0021355
Uncharacterized protein.
    
 0.636
scyTo_0002038
CARD domain-containing protein.
    
 0.587
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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