scyTo_0017002 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0017002

DUF3456 domain-containing protein. (118 aa)

Predicted Functional Partners:

scyTo_0006878

0.698

scyTo_0005740

0.587

scyTo_0008438

0.530

scyTo_0015806

0.516

scyTo_0019620

0.512

scyTo_0001690

0.501

scyTo_0022598

0.497

scyTo_0007350

0.467

scyTo_0007290

0.421

scyTo_0023114

0.421

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0001690	scyTo_0007350	A0A401PF73	A0A401NQM8	Uncharacterized protein.	Uncharacterized protein.	0.459
scyTo_0001690	scyTo_0017002	A0A401PF73	A0A401Q2X9	Uncharacterized protein.	DUF3456 domain-containing protein.	0.501
scyTo_0001690	scyTo_0022598	A0A401PF73	A0A401Q9D7	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.526
scyTo_0005740	scyTo_0017002	A0A401PC15	A0A401Q2X9	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	DUF3456 domain-containing protein.	0.587
scyTo_0006878	scyTo_0017002	A0A401NHZ1	A0A401Q2X9	Uncharacterized protein.	DUF3456 domain-containing protein.	0.698
scyTo_0007290	scyTo_0017002	A0A401NPP1	A0A401Q2X9	Uncharacterized protein.	DUF3456 domain-containing protein.	0.421
scyTo_0007290	scyTo_0023114	A0A401NPP1	A0A401Q6H6	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.929
scyTo_0007350	scyTo_0001690	A0A401NQM8	A0A401PF73	Uncharacterized protein.	Uncharacterized protein.	0.459
scyTo_0007350	scyTo_0017002	A0A401NQM8	A0A401Q2X9	Uncharacterized protein.	DUF3456 domain-containing protein.	0.467
scyTo_0007350	scyTo_0019620	A0A401NQM8	A0A401Q3E0	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.509
scyTo_0007350	scyTo_0022598	A0A401NQM8	A0A401Q9D7	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.471
scyTo_0008438	scyTo_0017002	A0A401P9B5	A0A401Q2X9	DUF3456 domain-containing protein.	DUF3456 domain-containing protein.	0.530
scyTo_0015806	scyTo_0017002	A0A401PYS6	A0A401Q2X9	RING-type domain-containing protein.	DUF3456 domain-containing protein.	0.516
scyTo_0017002	scyTo_0001690	A0A401Q2X9	A0A401PF73	DUF3456 domain-containing protein.	Uncharacterized protein.	0.501
scyTo_0017002	scyTo_0005740	A0A401Q2X9	A0A401PC15	DUF3456 domain-containing protein.	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	0.587
scyTo_0017002	scyTo_0006878	A0A401Q2X9	A0A401NHZ1	DUF3456 domain-containing protein.	Uncharacterized protein.	0.698
scyTo_0017002	scyTo_0007290	A0A401Q2X9	A0A401NPP1	DUF3456 domain-containing protein.	Uncharacterized protein.	0.421
scyTo_0017002	scyTo_0007350	A0A401Q2X9	A0A401NQM8	DUF3456 domain-containing protein.	Uncharacterized protein.	0.467
scyTo_0017002	scyTo_0008438	A0A401Q2X9	A0A401P9B5	DUF3456 domain-containing protein.	DUF3456 domain-containing protein.	0.530
scyTo_0017002	scyTo_0015806	A0A401Q2X9	A0A401PYS6	DUF3456 domain-containing protein.	RING-type domain-containing protein.	0.516