scyTo_0023815 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0023815

SHMT domain-containing protein. (89 aa)

Predicted Functional Partners:

scyTo_0013269

0.999

scyTo_0010868

0.989

scyTo_0004849

0.986

scyTo_0003704

0.980

scyTo_0012420

0.979

scyTo_0027297

0.979

scyTo_0018806

0.974

scyTo_0014403

0.963

scyTo_0017564

0.960

scyTo_0010460

0.958

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003704	scyTo_0004849	A0A401PNC5	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.944
scyTo_0003704	scyTo_0010460	A0A401PNC5	A0A401P6U6	Uncharacterized protein.	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.	0.919
scyTo_0003704	scyTo_0010868	A0A401PNC5	A0A401PCJ7	Uncharacterized protein.	Uncharacterized protein.	0.998
scyTo_0003704	scyTo_0012420	A0A401PNC5	A0A401P8B2	Uncharacterized protein.	MGS domain-containing protein.	0.633
scyTo_0003704	scyTo_0013269	A0A401PNC5	A0A401NSW4	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.902
scyTo_0003704	scyTo_0017564	A0A401PNC5	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.532
scyTo_0003704	scyTo_0018806	A0A401PNC5	A0A401Q363	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.996
scyTo_0003704	scyTo_0023815	A0A401PNC5	A0A401QCK8	Uncharacterized protein.	SHMT domain-containing protein.	0.980
scyTo_0003704	scyTo_0027297	A0A401PNC5	A0A401QMD8	Uncharacterized protein.	Uncharacterized protein.	0.633
scyTo_0004849	scyTo_0003704	A0A401NY07	A0A401PNC5	Uncharacterized protein.	Uncharacterized protein.	0.944
scyTo_0004849	scyTo_0010460	A0A401NY07	A0A401P6U6	Uncharacterized protein.	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.	0.947
scyTo_0004849	scyTo_0010868	A0A401NY07	A0A401PCJ7	Uncharacterized protein.	Uncharacterized protein.	0.974
scyTo_0004849	scyTo_0012420	A0A401NY07	A0A401P8B2	Uncharacterized protein.	MGS domain-containing protein.	0.970
scyTo_0004849	scyTo_0013269	A0A401NY07	A0A401NSW4	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.999
scyTo_0004849	scyTo_0014403	A0A401NY07	A0A401NLY6	Uncharacterized protein.	Uncharacterized protein.	0.740
scyTo_0004849	scyTo_0017564	A0A401NY07	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.937
scyTo_0004849	scyTo_0018806	A0A401NY07	A0A401Q363	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.991
scyTo_0004849	scyTo_0023815	A0A401NY07	A0A401QCK8	Uncharacterized protein.	SHMT domain-containing protein.	0.986
scyTo_0004849	scyTo_0027297	A0A401NY07	A0A401QMD8	Uncharacterized protein.	Uncharacterized protein.	0.970
scyTo_0010460	scyTo_0003704	A0A401P6U6	A0A401PNC5	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.	Uncharacterized protein.	0.919