STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hasR_1Unannotated protein. (995 aa)    
Predicted Functional Partners:
NCTC8284_00520
Unannotated protein.
 
     0.856
tonB_1
Unannotated protein.
 
 
 0.821
fcuA_3
Unannotated protein.
 
  
 0.562
tbpB
Unannotated protein.
    
 
 0.502
NCTC8284_00518
Unannotated protein.
       0.491
NCTC8284_01194
Unannotated protein.
  
     0.487
NCTC8284_03634
Unannotated protein.
 
  
 0.455
GCA_000730685_02214
Unannotated protein.
  
  
 0.427
NCTC8284_01587
Unannotated protein.
 
  
 0.416
Your Current Organism:
Rodentibacter pneumotropicus
NCBI taxonomy Id: 758
Other names: ATCC 35149, CCUG 12398, CIP 66.16, DSM 21403, JCM 14074, LMG 4224, LMG:4224, NCTC 8141, Pasteurella pneumotropica, Pasteurellaceae bacterium Ac63, R. pneumotropicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.