STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI41024.1D-amino-acid dehydrogenase. (379 aa)    
Predicted Functional Partners:
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.780
SHI65999.1
Sarcosine oxidase subunit beta.
  
     0.690
SHJ21510.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
   
   0.659
SHI49116.1
Acyl transferase domain-containing protein.
    
 0.644
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
   0.637
SHI99190.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.634
SHK01014.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
   
 
  0.626
SHK08007.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.626
SHI40983.1
yiaA/B two helix domain-containing protein.
       0.625
SHI52259.1
Putative hydrolase of the HAD superfamily.
  
  
  0.624
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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