STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI43513.1Alcohol dehydrogenase. (407 aa)    
Predicted Functional Partners:
SHJ21549.1
Alcohol dehydrogenase, propanol-preferring.
 
   0.801
SHI79203.1
Hypothetical protein.
    
  0.619
SHI43476.1
DNA-binding transcriptional regulator, AcrR family.
       0.594
SHI43544.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.522
SHI80426.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
    0.449
SHI49116.1
Acyl transferase domain-containing protein.
     
 0.445
SHJ44080.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
   0.431
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.