STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI37158.1Signal transduction histidine kinase. (399 aa)    
Predicted Functional Partners:
SHK41668.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.788
SHK47537.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.788
SHI61051.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.778
SHJ32861.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.777
SHJ53944.1
Signal transduction histidine kinase.
  
     0.772
SHI39991.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.767
SHI45452.1
Signal transduction histidine kinase.
  
     0.767
SHK64326.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.766
SHJ83146.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.765
SHJ34887.1
Signal transduction histidine kinase.
  
     0.763
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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