STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI53445.12-haloacid dehalogenase. (234 aa)    
Predicted Functional Partners:
SHJ99575.1
2-haloacid dehalogenase.
  
     0.745
SHK80097.1
Glycine/D-amino acid oxidase.
    
  0.688
SHJ64395.1
Sarcosine oxidase.
 
  
  0.645
SHI53409.1
SecD/SecF fusion protein.
       0.629
SHJ31238.1
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.615
SHJ34779.1
Sarcosine oxidase.
    
  0.588
SHK84525.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.561
SHI53487.1
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
       0.457
SHI62651.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.444
SHJ19025.1
Permease of the drug/metabolite transporter (DMT) superfamily.
  
     0.429
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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