STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI55130.1DNA-binding ferritin-like protein (Dps family). (114 aa)    
Predicted Functional Partners:
SHI55096.1
DNA-binding ferritin-like protein (Dps family).
    
0.952
SHI55055.1
DNA-binding transcriptional regulator, PadR family.
 
     0.951
SHJ66134.1
ABC-2 type transport system permease protein.
 
     0.701
SHJ66072.1
DNA-binding ferritin-like protein (Dps family).
  
     0.650
SHJ66099.1
ABC-2 type transport system ATP-binding protein.
  
     0.560
SHK81598.1
ABC-2 type transport system permease protein.
  
     0.437
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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