STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI57820.1Magnesium chelatase subunit D. (699 aa)    
Predicted Functional Partners:
SHI57596.1
Cobaltochelatase CobN.
 
 
 0.977
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
   
 0.959
SHI57788.1
cob(I)alamin adenosyltransferase.
 
   
 0.953
SHI57858.1
precorrin-6Y C5,15-methyltransferase (decarboxylating).
 
   
 0.898
SHI57938.1
Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase.
 
   
 0.856
SHI52117.1
Hypothetical protein.
    
  0.801
SHI87231.1
Hypothetical protein.
    
  0.801
SHJ59653.1
Protein of unknown function.
    
  0.801
SHJ33484.1
Phytoene synthase.
 
  
 0.760
SHI57967.1
precorrin-8X/cobalt-precorrin-8 methylmutase.
 
   
 0.757
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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