STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI78868.1Pilus assembly protein CpaE. (168 aa)    
Predicted Functional Partners:
SHI78898.1
Pilus assembly protein CpaE.
      0.974
SHI78926.1
Pilus assembly protein CpaB.
  
  
 0.962
SHI78760.1
Tight adherence protein C.
  
  
 0.894
SHI78782.1
Tight adherence protein B.
  
    0.851
SHJ06386.1
Flp pilus assembly protein CpaB.
  
  
 0.839
SHI78842.1
TadE-like protein.
       0.778
SHI78809.1
Pilus assembly protein CpaF.
  
    0.771
SHK76689.1
TadE-like protein.
  
    0.761
SHK76726.1
TadE-like protein.
  
    0.761
SHK36993.1
Type II secretion system (T2SS), protein F.
  
    0.738
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.