STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI96104.1Sporulation and spore germination. (518 aa)    
Predicted Functional Partners:
SHI96136.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
     0.892
SHI96169.1
Two-component system, OmpR family, response regulator MtrA.
     
 0.758
SHK21393.1
Hypothetical protein.
  
     0.749
SHJ00263.1
rsbT co-antagonist protein RsbR.
      
 0.721
SHJ84181.1
Protein of unknown function.
  
     0.705
SHK80480.1
Sirohydrochlorin ferrochelatase.
  
     0.698
SHJ90420.1
Hypothetical protein.
  
     0.671
SHK37028.1
Tight adherence protein B.
  
     0.614
SHI96796.1
Protein of unknown function.
 
     0.597
SHI88470.1
SseB protein N-terminal domain-containing protein.
  
     0.596
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.