STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI98274.1ADP-ribose pyrophosphatase YjhB, NUDIX family. (186 aa)    
Predicted Functional Partners:
SHI98238.1
Putative hydrolase.
       0.853
nnrD
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specif [...]
   
 0.845
SHI67683.1
Helicase conserved C-terminal domain-containing protein.
  
 
  0.803
SHJ96616.1
Helicase conserved C-terminal domain-containing protein.
  
 
  0.803
SHI99134.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
    
  0.776
SHK09350.1
Superfamily II DNA and RNA helicase.
    
  0.776
SHI98209.1
Nucleoside-diphosphate-sugar epimerase.
       0.718
SHI44661.1
Acyl-CoA thioesterase.
  
  
  0.674
SHI97032.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
      0.661
SHI49116.1
Acyl transferase domain-containing protein.
   
 0.649
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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