STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ34554.1Uncharacterized membrane protein YeiB. (409 aa)    
Predicted Functional Partners:
SHJ34517.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.723
SHJ99706.1
Uncharacterized protein.
  
     0.609
SHJ90600.1
Protein of unknown function.
  
     0.490
SHK64534.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
     0.481
SHK00764.1
Uncharacterized protein.
  
     0.471
SHJ34586.1
Nucleotidyltransferase domain-containing protein.
       0.466
SHK41289.1
Phosphotransferase enzyme family protein.
  
     0.459
SHI67286.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.436
SHJ96973.1
DinB superfamily protein.
  
     0.424
SHI43898.1
Protein of unknown function.
  
     0.407
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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