STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ45546.1Iron-containing redox enzyme. (333 aa)    
Predicted Functional Partners:
SHJ45516.1
Iron-binding zinc finger CDGSH type.
 
     0.964
SHJ45491.1
Release factor glutamine methyltransferase.
 
     0.957
SHJ45582.1
L-histidine Nalpha-methyltransferase.
       0.773
SHI96242.1
Protein of unknown function.
  
     0.518
SHI96269.1
Hypothetical protein.
  
     0.455
SHJ97171.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.455
SHJ77485.1
Alpha/beta hydrolase family protein.
  
     0.446
SHJ44004.1
Rho termination factor, N-terminal domain.
  
     0.411
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.