STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ45609.1Multimeric flavodoxin WrbA. (178 aa)    
Predicted Functional Partners:
SHJ19243.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
    0.732
SHJ44080.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.673
SHK60900.1
Hypothetical protein.
   
    0.663
SHK64061.1
Transmembrane protein of unknown function.
   
    0.663
SHK14118.1
Transketolase; Belongs to the transketolase family.
   
    0.503
SHJ18001.1
Hypothetical protein.
  
    0.501
SHJ16959.1
Catalase.
   
    0.465
SHJ10083.1
Trehalose 6-phosphate synthase.
   
    0.435
SHJ47801.1
Hypothetical protein.
   
    0.432
SHJ49125.1
Hypothetical protein.
  
    0.430
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.