STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ46167.1Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. (700 aa)    
Predicted Functional Partners:
SHJ46135.1
Rhamnulokinase.
  
 0.981
SHJ46197.1
L-rhamnose isomerase / sugar isomerase.
 
     0.965
SHJ45281.1
L-rhamnose mutarotase.
 
  
 0.895
SHI52117.1
Hypothetical protein.
    
  0.751
SHI87231.1
Hypothetical protein.
    
  0.751
SHJ59653.1
Protein of unknown function.
    
  0.751
SHI87832.1
DinB superfamily protein.
    
  0.711
SHJ16995.1
Hypothetical protein.
    
  0.711
SHJ89304.1
Hypothetical protein.
    
  0.711
SHJ89329.1
Hypothetical protein.
    
  0.711
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.