STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ43268.1Membrane protease YdiL, CAAX protease family. (579 aa)    
Predicted Functional Partners:
SHJ43296.1
Leucine efflux protein.
       0.645
SHK83088.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.591
SHJ92074.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
    0.580
SHJ43241.1
Regulatory protein, tetR family.
       0.555
SHK41289.1
Phosphotransferase enzyme family protein.
  
     0.502
SHI60370.1
Uncharacterized protein.
  
     0.489
SHI40194.1
Phosphotransferase enzyme family protein.
  
     0.472
SHK49775.1
Uncharacterized protein.
  
     0.466
SHJ97591.1
Hypothetical protein.
  
     0.446
SHI57142.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
  
     0.420
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.