STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ55639.1Streptomycin 6-kinase. (310 aa)    
Predicted Functional Partners:
SHJ55670.1
Sirohydrochlorin ferrochelatase.
 
     0.729
SHJ24686.1
Acetyltransferase (GNAT) family protein.
  
     0.717
SHK24710.1
Hypothetical protein.
  
     0.630
SHK62433.1
Hypothetical protein.
  
     0.630
SHJ18913.1
Hypothetical protein.
  
     0.574
SHJ18891.1
NACHT domain-containing protein.
  
     0.562
SHJ18458.1
Hypothetical protein.
  
     0.558
SHI85747.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
     0.555
SHK21393.1
Hypothetical protein.
  
     0.533
SHJ04847.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.