STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ55838.1Membrane protease YdiL, CAAX protease family. (715 aa)    
Predicted Functional Partners:
SHK24815.1
Hypothetical protein.
  
     0.658
SHK94888.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.615
SHJ84105.1
Carbamoyl-phosphate synthase large subunit.
  
     0.611
SHK54527.1
Uncharacterized membrane protein YccC.
  
     0.602
SHJ89725.1
Hypothetical protein.
  
     0.589
SHJ92074.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
    0.580
SHK78743.1
Methyltransferase, FkbM family.
  
     0.563
SHK49831.1
Tetratricopeptide repeat-containing protein.
  
     0.528
SHJ90420.1
Hypothetical protein.
  
     0.518
SHI79883.1
Hypothetical protein.
  
     0.512
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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