STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ66598.1Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (881 aa)    
Predicted Functional Partners:
SHJ99263.1
Citrate synthase; Belongs to the citrate synthase family.
 
 0.993
SHI55949.1
Citrate synthase.
 
 0.961
SHI65482.1
Citrate synthase.
  
 0.952
SHJ03089.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.950
SHJ02124.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
 0.841
SHJ02323.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
 0.841
SHJ25417.1
Glutamate synthase (NADPH/NADH) large chain.
  
  
 0.838
SHJ30467.1
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.818
SHJ60474.1
3-isopropylmalate dehydrogenase.
 
 0.805
ftsH
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
    
 0.757
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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