STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ66841.1Concanavalin A-like lectin/glucanases superfamily protein. (710 aa)    
Predicted Functional Partners:
SHK76461.1
RHS repeat-associated core domain-containing protein.
    0.758
SHK38898.1
Intein C-terminal splicing region/RHS repeat-associated core domain-containing protein.
    0.753
SHK01262.1
Hypothetical protein.
  
 
   0.719
SHJ07344.1
Protein of unknown function.
  
     0.702
SHK89032.1
Right handed beta helix region.
 
 
   0.664
SHI80542.1
Glycosyl transferase family 2.
  
 
   0.644
SHJ46356.1
Hypothetical protein.
   
   0.618
SHI66382.1
Phosphotransferase enzyme family protein.
  
     0.596
SHK90073.1
LPXTG-motif cell wall anchor domain-containing protein.
  
 
   0.570
SHJ33923.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
 
   0.569
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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