STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ78550.1Ubiquinone biosynthesis protein. (666 aa)    
Predicted Functional Partners:
SHI49964.1
Aromatase.
    
   0.448
SHJ90331.1
Methyltransferase domain-containing protein.
    
   0.440
SHJ78522.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
       0.418
SHI41122.1
Methyltransferase domain-containing protein.
    
   0.400
SHI44559.1
Methyltransferase domain-containing protein.
    
   0.400
SHI57178.1
Hypothetical protein.
    
   0.400
SHI88701.1
Methyltransferase domain-containing protein.
    
   0.400
SHJ04479.1
3' terminal RNA ribose 2'-O-methyltransferase Hen1.
    
   0.400
SHJ06595.1
Methyltransferase domain-containing protein.
    
   0.400
SHJ35372.1
Methyltransferase domain-containing protein.
    
   0.400
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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