STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ72966.1ABC-2 type transport system permease protein. (390 aa)    
Predicted Functional Partners:
SHJ72934.1
ABC-2 type transport system ATP-binding protein.
 
    0.944
SHJ72996.1
ABC-2 type transport system permease protein.
 
    
0.856
SHJ73169.1
3-oxoacyl-[acyl-carrier-protein] synthase-3/clorobiocin biosynthesis protein CloN2.
  
     0.614
SHJ73577.1
FADH2 O2-dependent halogenase.
 
     0.561
SHJ92074.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
    0.535
SHJ72901.1
Protein of unknown function.
       0.528
SHI88042.1
PAP2 superfamily protein.
  
     0.497
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
    0.492
SHK23483.1
RloB-like protein.
  
     0.472
SHJ00094.1
3-hydroxypropanoate dehydrogenase.
   
    0.470
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.