STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ82240.1Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family. (143 aa)    
Predicted Functional Partners:
SHI46440.1
Hypothetical protein.
 
 
 0.958
SHI86759.1
Hypothetical protein.
 
 
 0.958
SHJ32722.1
Hypothetical protein.
 
 
 0.958
SHJ56297.1
Signal recognition particle receptor subunit beta, a GTPase.
 
   0.957
SHK80445.1
Signal recognition particle receptor subunit beta, a GTPase.
 
   0.957
SHI77488.1
Hypothetical protein.
  
   0.953
SHK48313.1
Signal recognition particle receptor subunit beta, a GTPase.
  
   0.953
SHJ78985.1
Trypsin-like peptidase domain-containing protein.
  
   0.815
SHI77403.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
     0.799
SHI46412.1
Protein of unknown function.
 
  
 0.796
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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