STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ82677.1SnoaL-like domain-containing protein. (130 aa)    
Predicted Functional Partners:
SHJ82647.1
DNA-binding transcriptional regulator, PadR family.
 
     0.778
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
       0.773
SHK00983.1
Regulatory protein, tetR family.
  
     0.509
SHK00897.1
Hypothetical protein.
  
     0.475
SHI38432.1
Saccharopine dehydrogenase NADP binding domain-containing protein.
  
     0.467
SHK00951.1
Hypothetical protein.
  
     0.454
SHJ82618.1
Ion channel.
       0.445
SHI39274.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.430
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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