STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ89774.1LAO/AO transport system kinase. (370 aa)    
Predicted Functional Partners:
ScpA
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
  
 0.998
SHJ53399.1
methylmalonyl-CoA mutase, N-terminal domain.
  
 0.995
SHJ89822.1
methylmalonyl-CoA mutase.
 
  
 0.993
SHK99032.1
methylmalonyl-CoA mutase, C-terminal domain.
    0.905
SHJ53660.1
methylmalonyl-CoA/ethylmalonyl-CoA epimerase.
     0.811
SHJ91363.1
Methylaspartate mutase sigma subunit.
  
    0.628
SHJ02595.1
propionyl-CoA carboxylase beta chain.
 
     0.588
SHJ89745.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
       0.415
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.