STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ89937.1Serine/threonine protein kinase. (550 aa)    
Predicted Functional Partners:
SHK34393.1
Protein phosphatase.
   0.840
SHK51604.1
Serine/threonine protein phosphatase PrpC.
 
   0.838
SHK21487.1
Hypothetical protein.
  
     0.765
SHK48491.1
Serine/threonine protein kinase.
  
   0.755
SHJ99424.1
Serine/threonine protein phosphatase PrpC.
  
   0.732
SHK34433.1
FHA domain-containing protein.
 
 
 
 0.714
SHJ16249.1
Zinc-ribbon domain-containing protein.
  
 
 
 0.712
SHJ89916.1
Hypothetical protein.
       0.705
SHI88316.1
Serine/threonine protein kinase.
  
     0.701
SHK34475.1
Inner membrane component of T3SS domain-containing protein.
 
 
 
 0.625
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.