STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK00951.1Hypothetical protein. (408 aa)    
Predicted Functional Partners:
SHK00983.1
Regulatory protein, tetR family.
 
     0.868
SHK00870.1
Isoquinoline 1-oxidoreductase, beta subunit.
 
     0.645
SHK49804.1
HEXXH motif-containing protein.
  
     0.579
SHK01145.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.533
SHK00897.1
Hypothetical protein.
 
    
0.521
SHK49714.1
Tetratricopeptide repeat-containing protein.
  
     0.486
SHK29011.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
   
    0.463
SHI40300.1
Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase.
   
    0.455
SHJ82677.1
SnoaL-like domain-containing protein.
  
     0.454
SHK56427.1
NB-ARC domain-containing protein.
  
     0.452
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.