STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK12516.1Uncharacterized conserved protein YndB, AHSA1/START domain. (173 aa)    
Predicted Functional Partners:
SHK12490.1
DNA-binding transcriptional regulator, ArsR family.
 
     0.812
SHK12459.1
Predicted oxidoreductase.
       0.550
SHK12566.1
Uncharacterized membrane protein YdfJ, MMPL/SSD domain.
       0.528
SHK12545.1
Two-component system, OmpR family, response regulator.
       0.528
SHJ86117.1
Multiple sugar transport system permease protein/trehalose/maltose transport system permease protein.
  
    0.441
SHJ36414.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.424
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.