STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK21261.1Predicted arabinose efflux permease, MFS family. (450 aa)    
Predicted Functional Partners:
SHK21229.1
L-myo-inositol-1-phosphate synthase.
     
 0.852
SHK83314.1
Conserved hypothetical protein.
  
     0.633
SHI86905.1
Phosphatidylinositol alpha-mannosyltransferase.
  
     0.558
SHK29088.1
Hypothetical protein.
  
     0.541
SHI86938.1
Hypothetical protein.
  
     0.512
SHI54065.1
Predicted acetyltransferase.
   
    0.501
SHI54142.1
Predicted acetyltransferase.
   
    0.501
SHK63978.1
Protein of unknown function.
  
     0.482
SHJ53768.1
Hypothetical protein.
  
     0.468
SHJ32404.1
Hypothetical protein.
  
     0.467
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.