STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK24173.1Hypothetical protein. (276 aa)    
Predicted Functional Partners:
SHI47864.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 
 0.940
SHI60901.1
Aryl-alcohol dehydrogenase.
  
 
 0.940
SHK39743.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
 
 0.940
SHJ81868.1
DNA-binding transcriptional regulator, FrmR family.
  
  
 0.863
SHI77604.1
Acyl transferase domain-containing protein.
     
 0.565
SHK24200.1
Uncharacterized conserved protein YbgA, DUF1722 family.
       0.509
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
  
 0.500
mshA
D-inositol-3-phosphate glycosyltransferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
       0.484
SHI63253.1
Hypothetical protein.
  
    0.471
SHI49116.1
Acyl transferase domain-containing protein.
   
 
 0.449
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.