STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK25881.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (254 aa)    
Predicted Functional Partners:
SHJ73102.1
Clorobiocin biosynthesis protein CloN4; Belongs to the ATP-dependent AMP-binding enzyme family.
 
      0.900
SHJ42364.1
Amino acid adenylation domain-containing protein.
      0.826
SHJ74774.1
DNA-3-methyladenine glycosylase I.
      0.696
SHJ42337.1
Amino acid adenylation domain-containing protein.
      0.695
SHJ16133.1
Glycine dehydrogenase.
 
      0.659
SHJ21477.1
Ferredoxin.
  
    0.644
SHJ68932.1
Ferredoxin.
  
    0.644
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
      
 0.540
SHI49116.1
Acyl transferase domain-containing protein.
     
 0.510
SHI77546.1
Acyl transferase domain-containing protein.
     
 0.490
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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