STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK29816.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
SHK29846.1
Phage shock protein A.
 
     0.965
SHK29738.1
Hypothetical protein.
 
     0.898
SHJ02747.1
Hypothetical protein.
  
     0.772
SHK75509.1
Protein of unknown function.
  
     0.756
SHK93248.1
Hypothetical protein.
  
     0.752
SHK34007.1
Uncharacterized conserved protein, Tic20 family.
  
     0.751
SHK62242.1
Cell wall-active antibiotics response 4TMS YvqF.
  
     0.740
SHI76811.1
Protein of unknown function.
  
     0.729
SHK45345.1
Protein of unknown function.
  
     0.718
SHK89687.1
Cell wall-active antibiotics response 4TMS YvqF.
  
     0.712
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.