SHK51081.1 protein (Nocardiopsis flavescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHK51081.1

alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family. (364 aa)

Predicted Functional Partners:

SHK45816.1

0.754

SHK36507.1

0.726

SHJ24659.1

0.692

SHJ08010.1

0.665

SHK05404.1

0.664

SHI49116.1

0.660

SHK01014.1

0.637

SHI80632.1

0.627

SHJ48459.1

0.604

SHJ92153.1

0.604

Your Current Organism:

Nocardiopsis flavescens

NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI49116.1	SHI80632.1	SAMN05421803_101388	SAMN05421803_102157	Acyl transferase domain-containing protein.	Acyl dehydratase.	0.829
SHI49116.1	SHJ08010.1	SAMN05421803_101388	SAMN05421803_103372	Acyl transferase domain-containing protein.	Acyl-CoA dehydrogenase.	0.716
SHI49116.1	SHJ24659.1	SAMN05421803_101388	SAMN05421803_104272	Acyl transferase domain-containing protein.	hydroxymethylglutaryl-CoA lyase.	0.658
SHI49116.1	SHJ48459.1	SAMN05421803_101388	SAMN05421803_106210	Acyl transferase domain-containing protein.	Hypothetical protein.	0.716
SHI49116.1	SHJ92153.1	SAMN05421803_101388	SAMN05421803_111114	Acyl transferase domain-containing protein.	Hypothetical protein.	0.716
SHI49116.1	SHK01014.1	SAMN05421803_101388	SAMN05421803_112176	Acyl transferase domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.985
SHI49116.1	SHK05404.1	SAMN05421803_101388	SAMN05421803_11314	Acyl transferase domain-containing protein.	acyl-CoA dehydrogenase.	0.716
SHI49116.1	SHK36507.1	SAMN05421803_101388	SAMN05421803_11880	Acyl transferase domain-containing protein.	NUDIX domain-containing protein.	0.649
SHI49116.1	SHK45816.1	SAMN05421803_101388	SAMN05421803_12083	Acyl transferase domain-containing protein.	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.595
SHI49116.1	SHK51081.1	SAMN05421803_101388	SAMN05421803_1229	Acyl transferase domain-containing protein.	alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.	0.660
SHI80632.1	SHI49116.1	SAMN05421803_102157	SAMN05421803_101388	Acyl dehydratase.	Acyl transferase domain-containing protein.	0.829
SHI80632.1	SHJ08010.1	SAMN05421803_102157	SAMN05421803_103372	Acyl dehydratase.	Acyl-CoA dehydrogenase.	0.599
SHI80632.1	SHJ48459.1	SAMN05421803_102157	SAMN05421803_106210	Acyl dehydratase.	Hypothetical protein.	0.648
SHI80632.1	SHJ92153.1	SAMN05421803_102157	SAMN05421803_111114	Acyl dehydratase.	Hypothetical protein.	0.599
SHI80632.1	SHK01014.1	SAMN05421803_102157	SAMN05421803_112176	Acyl dehydratase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.852
SHI80632.1	SHK05404.1	SAMN05421803_102157	SAMN05421803_11314	Acyl dehydratase.	acyl-CoA dehydrogenase.	0.813
SHI80632.1	SHK36507.1	SAMN05421803_102157	SAMN05421803_11880	Acyl dehydratase.	NUDIX domain-containing protein.	0.615
SHI80632.1	SHK45816.1	SAMN05421803_102157	SAMN05421803_12083	Acyl dehydratase.	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.609
SHI80632.1	SHK51081.1	SAMN05421803_102157	SAMN05421803_1229	Acyl dehydratase.	alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.	0.627
SHJ08010.1	SHI49116.1	SAMN05421803_103372	SAMN05421803_101388	Acyl-CoA dehydrogenase.	Acyl transferase domain-containing protein.	0.716