STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK62371.1Lipooligosaccharide transport system ATP-binding protein. (320 aa)    
Predicted Functional Partners:
SHK62406.1
Lipooligosaccharide transport system permease protein.
 
    0.958
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
  0.739
SHJ68983.1
ATP-binding cassette, subfamily B.
  
 
 
0.660
SHJ69010.1
ATP-binding cassette, subfamily B.
  
 
 
0.658
SHK24926.1
ATP-binding cassette, subfamily B.
  
 
 
0.647
SHJ86037.1
ATP-binding cassette, subfamily B.
  
 
 
0.639
SHI51736.1
Hypothetical protein.
    
  0.623
SHI38625.1
ABC-type multidrug transport system, ATPase and permease component.
    
 
0.623
SHI65207.1
ATP-binding cassette, subfamily C.
    
  0.623
SHI65244.1
Putative ABC transport system ATP-binding protein.
    
  0.623
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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