STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK65095.1Pimeloyl-ACP methyl ester carboxylesterase. (300 aa)    
Predicted Functional Partners:
SHK64972.1
Branched-chain amino acid transport system substrate-binding protein.
 
     0.899
SHK65069.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.827
SHK65042.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.807
SHK64995.1
Branched-chain amino acid transport system ATP-binding protein.
 
     0.802
SHK65021.1
Branched-chain amino acid transport system ATP-binding protein.
 
     0.790
SHI46412.1
Protein of unknown function.
    
  0.684
SHI86730.1
Protein of unknown function.
    
  0.684
SHI87650.1
glutaryl-CoA dehydrogenase.
    
  0.684
SHI77458.1
Protein of unknown function.
    
  0.684
SHJ08010.1
Acyl-CoA dehydrogenase.
    
  0.684
Your Current Organism:
Nocardiopsis flavescens
NCBI taxonomy Id: 758803
Other names: CGMCC 4.5723, JCM 17424, N. flavescens, Nocardiopsis flavescens Fang et al. 2011, Nocardiopsis sp. SA6, strain SA6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.